PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA55G00051
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C3H
Protein Properties Length: 474aa    MW: 51826.3 Da    PI: 8.5149
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA55G00051genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.64.5e-08107129326
                 S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                 ++lC+f+ + G C yGd+C++ H+
  AA55G00051 107 EKLCNFWVE-GNCTYGDKCRYLHC 129
                 579******.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.00422752IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.5632753IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315104131IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-5106130IPR000571Zinc finger, CCCH-type
PfamPF006428.9E-6107129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-6108125IPR000571Zinc finger, CCCH-type
SuperFamilySSF509787.32E-34120337IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.105.5E-10126207IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.0044135175IPR001680WD40 repeat
PfamPF004008.4E-4138175IPR001680WD40 repeat
PROSITE profilePS500829.807142184IPR001680WD40 repeat
PROSITE profilePS502949.599142184IPR017986WD40-repeat-containing domain
PROSITE patternPS006780162176IPR019775WD40 repeat, conserved site
PRINTSPR003203.8E-5162176IPR020472G-protein beta WD-40 repeat
Gene3DG3DSA:2.130.10.104.7E-27208467IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003203.3215252IPR001680WD40 repeat
PROSITE profilePS5029414.107222333IPR017986WD40-repeat-containing domain
SMARTSM003200.0094259296IPR001680WD40 repeat
PfamPF004000.045264296IPR001680WD40 repeat
PROSITE profilePS5008211.912266305IPR001680WD40 repeat
PROSITE patternPS006780283297IPR019775WD40 repeat, conserved site
PRINTSPR003203.8E-5283297IPR020472G-protein beta WD-40 repeat
SMARTSM003200.25299336IPR001680WD40 repeat
SMARTSM0032032377415IPR001680WD40 repeat
SuperFamilySSF509787.32E-34385465IPR017986WD40-repeat-containing domain
PRINTSPR003203.8E-5402416IPR020472G-protein beta WD-40 repeat
SMARTSM003204.2427464IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MDFDSNGGNK RVFHRLGGSN RSMAPTDSRQ KVCYHWQAGR CTRNPCNFLH RELPAPGPGP  60
NAASYTNKRV ADESGFAGPS HRRGPGFSGK SNSWGRFGGN SNVTKTEKLC NFWVEGNCTY  120
GDKCRYLHCW SKGDGFSLLT QLDGHGKKLV SGIALPSGSD KLYTGSKDET LRVWDCASGQ  180
CTGVLNLGGE IGCLINEGPW LLVGMPNQVK AWNIESNVDM SLTGPVGQVY SLVVGTDLLF  240
AGIHDGSILV WRYNATTSCF EPAASLKGHT LAVVTLYVGA NRLYSGSMDK SIKVWNLDNL  300
QCIQTLTDHT SVVMSLICWD QFLLSCSLDK TVKSCSLLCW RFLFCRYGLQ LKVVTWKLHT  360
LITKNMYSSL YILSSSSVCC NVTLSGVLAL CGVHDAEAKP VLLCSCNDNS MRLYDLPSSL  420
GSFSLIRFTE RGKIFAKQEI RSIQIGPGGL FFTGDGTGQV KVWKWSTEPT IASS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ovp_B5e-15142418114395F-box/WD repeat protein 7
2ovq_B5e-15142418114395F-box/WD repeat protein 7
2ovr_B5e-15142418114395F-box/WD repeat protein 7
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401881.10.0hypothetical protein EUTSA_v10013582mg
SwissprotQ9FNZ10.0C3H63_ARATH; Zinc finger CCCH domain-containing protein 63
TrEMBLV4LHV70.0V4LHV7_EUTSA; Uncharacterized protein
STRINGAT5G51980.20.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18392869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.20.0C3H family protein